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<title>Compressed data structure</title>

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<span id="openzim-page-title" class="mw-page-title-main"><span class="mw-page-title-main">Compressed data structure</span></span>

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<div id="mw-content-text" class="mw-body-content mw-content-ltr" lang="en" dir="ltr"><div class="mw-content-ltr mw-parser-output" lang="en" dir="ltr"><p>The term <b>compressed data structure</b> arises in the <a href="Computer_science" title="Computer science">computer science</a> subfields of <a href="Algorithms" class="mw-redirect" title="Algorithms">algorithms</a>, <a href="Data_structures" class="mw-redirect" title="Data structures">data structures</a>, and <a href="Theoretical_computer_science" title="Theoretical computer science">theoretical computer science</a>. It refers to a data structure whose operations are roughly as fast as those of a conventional data structure for the problem, but whose size can be substantially smaller. The size of the compressed data structure is typically highly dependent upon the <a href="Information_entropy" class="mw-redirect" title="Information entropy">information entropy</a> of the data being represented.

</p><p>Important examples of compressed data structures include the <a href="Compressed_suffix_array" title="Compressed suffix array">compressed suffix array</a><sup id="cite_ref-1" class="reference"><a href="#cite_note-1"><span class="cite-bracket">[</span>1<span class="cite-bracket">]</span></a></sup><sup id="cite_ref-2" class="reference"><a href="#cite_note-2"><span class="cite-bracket">[</span>2<span class="cite-bracket">]</span></a></sup> and the <a href="FM-index" title="FM-index">FM-index</a>,<sup id="cite_ref-3" class="reference"><a href="#cite_note-3"><span class="cite-bracket">[</span>3<span class="cite-bracket">]</span></a></sup> both of which can represent an arbitrary text of characters <i>T</i> for <a href="Pattern_matching" title="Pattern matching">pattern matching</a>. Given any input pattern <i>P</i>, they support the operation of finding if and where <i>P</i> appears in <i>T</i>. The search time is proportional to the sum of the length of pattern <i>P</i>, a very slow-growing function of the length of the text <i>T</i>, and the number of reported matches. The space they occupy is roughly equal to the size of the text <i>T</i> in entropy-compressed form, such as that obtained by <a href="Prediction_by_Partial_Matching" class="mw-redirect" title="Prediction by Partial Matching">Prediction by Partial Matching</a> or <a href="Gzip" title="Gzip">gzip</a>. Moreover, both data structures are self-indexing, in that they can reconstruct the text <i>T</i> in a random access manner, and thus the underlying text <i>T</i> can be discarded. In other words, they simultaneously provide a compressed and quickly searchable representation of the text <i>T</i>. They represent a substantial space improvement over the conventional <a href="Suffix_tree" title="Suffix tree">suffix tree</a> and <a href="Suffix_array" title="Suffix array">suffix array</a>, which occupy many times more space than the size of <i>T</i>. They also support searching for arbitrary patterns, as opposed to the <a href="Inverted_index" title="Inverted index">inverted index</a>, which can support only word-based searches. In addition, inverted indexes do not have the self-indexing feature.

</p><p>An important related notion is that of a <a href="Succinct_data_structure" title="Succinct data structure">succinct data structure</a>, which uses space roughly equal to the information-theoretic minimum, which is a worst-case notion of the space needed to represent the data. In contrast, the size of a compressed data structure depends upon the particular data being represented. When the data are compressible, as is often the case in practice for natural language text, the compressed data structure can occupy space very close to the information-theoretic minimum, and significantly less space than most compression schemes.

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<div class="mw-heading mw-heading2"><h2 id="References">References</h2></div>

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</style><cite id="CITEREFGrossiVitter2005" class="citation journal cs1">Grossi, Roberto; Vitter, Jeffrey Scott (January 2005). <a rel="nofollow" class="external text" href="http://www.ittc.ku.edu/~jsv/Papers/GrV05.text_indexing.pdf">"Compressed Suffix Arrays and Suffix Trees with Applications to Text Indexing and String Matching"</a> <span class="cs1-format">(PDF)</span>. <i>SIAM Journal on Computing</i>. <b>35</b> (2): <span class="nowrap">378–</span>407. <a href="Doi_(identifier)" class="mw-redirect" title="Doi (identifier)">doi</a>:<a rel="nofollow" class="external text" href="https://doi.org/10.1137%2FS0097539702402354">10.1137/S0097539702402354</a>. <a href="Hdl_(identifier)" class="mw-redirect" title="Hdl (identifier)">hdl</a>:<a rel="nofollow" class="external text" href="https://hdl.handle.net/1808%2F18962">1808/18962</a>.</cite></span>

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<li id="cite_note-2"><span class="mw-cite-backlink"><b><a href="#cite_ref-2">^</a></b></span> <span class="reference-text">R. Grossi, A. Gupta, and J. S. Vitter, High-Order Entropy-Compressed Text Indexes, <i>Proceedings of the 14th Annual SIAM/ACM Symposium on Discrete Algorithms</i>, January 2003, 841-850.</span>

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<li id="cite_note-3"><span class="mw-cite-backlink"><b><a href="#cite_ref-3">^</a></b></span> <span class="reference-text"><cite id="CITEREFFerraginaManzini2000" class="citation book cs1">Ferragina, P.; Manzini, G. (2000). "Opportunistic data structures with applications". <i>Proceedings 41st Annual Symposium on Foundations of Computer Science</i>. pp. <span class="nowrap">390–</span>398. <a href="Doi_(identifier)" class="mw-redirect" title="Doi (identifier)">doi</a>:<a rel="nofollow" class="external text" href="https://doi.org/10.1109%2FSFCS.2000.892127">10.1109/SFCS.2000.892127</a>. <a href="ISBN_(identifier)" class="mw-redirect" title="ISBN (identifier)">ISBN</a> <bdi>0-7695-0850-2</bdi>. <a href="S2CID_(identifier)" class="mw-redirect" title="S2CID (identifier)">S2CID</a> <a rel="nofollow" class="external text" href="https://api.semanticscholar.org/CorpusID:12530704">12530704</a>.</cite></span>

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</style><div id="Data_compression_methods241" style="font-size:114%;margin:0 4em"><a href="Data_compression" title="Data compression">Data compression</a> methods</div></th></tr><tr><th scope="row" class="navbox-group" style="width:1%"><a href="Lossless_compression" title="Lossless compression">Lossless</a><br>type</th><td class="navbox-list-with-group navbox-list navbox-odd" style="width:100%;padding:0"><div style="padding:0 0.25em"></div><table class="nowraplinks navbox-subgroup" style="border-spacing:0"><tbody><tr><th scope="row" class="navbox-group" style="width:1%"><a href="Entropy_coding" title="Entropy coding">Entropy</a></th><td class="navbox-list-with-group navbox-list navbox-odd" style="width:100%;padding:0"><div style="padding:0 0.25em">

<ul><li><a href="Adaptive_coding" title="Adaptive coding">Adaptive coding</a></li>

<li><a href="Arithmetic_coding" title="Arithmetic coding">Arithmetic</a></li>

<li><a href="Asymmetric_numeral_systems" title="Asymmetric numeral systems">Asymmetric numeral systems</a></li>

<li><a href="Golomb_coding" title="Golomb coding">Golomb</a></li>

<li><a href="Huffman_coding" title="Huffman coding">Huffman</a>

<ul><li><a href="Adaptive_Huffman_coding" title="Adaptive Huffman coding">Adaptive</a></li>

<li><a href="Canonical_Huffman_code" title="Canonical Huffman code">Canonical</a></li>

<li><a href="Modified_Huffman_coding" title="Modified Huffman coding">Modified</a></li></ul></li>

<li><a href="Range_coding" title="Range coding">Range</a></li>

<li><a href="Shannon_coding" title="Shannon coding">Shannon</a></li>

<li><a href="Shannon%E2%80%93Fano_coding" title="Shannon–Fano coding">Shannon–Fano</a></li>

<li><a href="Shannon%E2%80%93Fano%E2%80%93Elias_coding" title="Shannon–Fano–Elias coding">Shannon–Fano–Elias</a></li>

<li><a href="Tunstall_coding" title="Tunstall coding">Tunstall</a></li>

<li><a href="Unary_coding" title="Unary coding">Unary</a></li>

<li><a href="Universal_code_(data_compression)" title="Universal code (data compression)">Universal</a>

<ul><li><a href="Exponential-Golomb_coding" title="Exponential-Golomb coding">Exp-Golomb</a></li>

<li><a href="Fibonacci_coding" title="Fibonacci coding">Fibonacci</a></li>

<li><a href="Elias_gamma_coding" title="Elias gamma coding">Gamma</a></li>

<li><a href="Levenshtein_coding" title="Levenshtein coding">Levenshtein</a></li></ul></li></ul>

</div></td></tr><tr><th scope="row" class="navbox-group" style="width:1%"><a href="Dictionary_coder" title="Dictionary coder">Dictionary</a></th><td class="navbox-list-with-group navbox-list navbox-even" style="width:100%;padding:0"><div style="padding:0 0.25em">

<ul><li><a href="Byte-pair_encoding" title="Byte-pair encoding">Byte-pair encoding</a></li>

<li><a href="LZ77_and_LZ78" title="LZ77 and LZ78">Lempel–Ziv</a>

<li><a href="Snappy_(compression)" title="Snappy (compression)">Snappy</a></li></ul></li></ul>

</div></td></tr><tr><th scope="row" class="navbox-group" style="width:1%">Other</th><td class="navbox-list-with-group navbox-list navbox-odd" style="width:100%;padding:0"><div style="padding:0 0.25em">

<li><a href="Delta_encoding" title="Delta encoding">Delta</a>

<ul><li><a href="Incremental_encoding" title="Incremental encoding">Incremental</a></li></ul></li>

<li><a href="Grammar-based_code" title="Grammar-based code">Grammar</a>

<li><a href="Sequitur_algorithm" title="Sequitur algorithm">Sequitur</a></li></ul></li>

</div></td></tr><tr><th scope="row" class="navbox-group" style="width:1%">Hybrid</th><td class="navbox-list-with-group navbox-list navbox-even" style="width:100%;padding:0"><div style="padding:0 0.25em">

<ul><li>LZ77 + Huffman

<ul><li><a href="Deflate" title="Deflate">Deflate</a></li>

<li>LZ77 + ANS

<ul><li><a href="LZFSE" title="LZFSE">LZFSE</a></li></ul></li>

<li>LZ77 + Huffman + ANS

<ul><li><a href="Zstd" title="Zstd">Zstandard</a></li></ul></li>

<li>LZ77 + Huffman + context

<ul><li><a href="Brotli" title="Brotli">Brotli</a></li></ul></li>

<li>LZSS + Huffman

<li>LZ77 + Range

<li>LZHAM</li></ul></li>

<li>RLE + BWT + MTF + Huffman

</div></td></tr></tbody></table><div></div></td></tr><tr><th scope="row" class="navbox-group" style="width:1%"><a href="Lossy_compression" title="Lossy compression">Lossy</a><br>type</th><td class="navbox-list-with-group navbox-list navbox-odd" style="width:100%;padding:0"><div style="padding:0 0.25em"></div><table class="nowraplinks navbox-subgroup" style="border-spacing:0"><tbody><tr><th scope="row" class="navbox-group" style="width:1%"><a href="Transform_coding" title="Transform coding">Transform</a></th><td class="navbox-list-with-group navbox-list navbox-odd" style="width:100%;padding:0"><div style="padding:0 0.25em">

<ul><li><a href="Discrete_cosine_transform" title="Discrete cosine transform">Discrete cosine transform</a>

<li><a href="Wavelet_transform" title="Wavelet transform">Wavelet</a>

<ul><li><a href="Daubechies_wavelet" title="Daubechies wavelet">Daubechies</a></li>

<li><a href="Set_partitioning_in_hierarchical_trees" title="Set partitioning in hierarchical trees">SPIHT</a></li></ul></li></ul>

</div></td></tr><tr><th scope="row" class="navbox-group" style="width:1%">Predictive</th><td class="navbox-list-with-group navbox-list navbox-even" style="width:100%;padding:0"><div style="padding:0 0.25em">

<ul><li><a href="Adaptive_differential_pulse-code_modulation" title="Adaptive differential pulse-code modulation">ADPCM</a></li></ul></li>

<ul><li><a href="Algebraic_code-excited_linear_prediction" title="Algebraic code-excited linear prediction">ACELP</a></li>

<li>Motion

<ul><li><a href="Motion_compensation" title="Motion compensation">Compensation</a></li>

<li><a href="Motion_estimation" title="Motion estimation">Estimation</a></li>

<li><a href="Motion_vector" class="mw-redirect" title="Motion vector">Vector</a></li></ul></li>

<li><a href="Psychoacoustics" title="Psychoacoustics">Psychoacoustic</a></li></ul>

</div></td></tr></tbody></table><div></div></td></tr><tr><th scope="row" class="navbox-group" style="width:1%"><a href="Data_compression#Audio" title="Data compression">Audio</a></th><td class="navbox-list-with-group navbox-list navbox-odd" style="width:100%;padding:0"><div style="padding:0 0.25em"></div><table class="nowraplinks navbox-subgroup" style="border-spacing:0"><tbody><tr><th scope="row" class="navbox-group" style="width:1%">Concepts</th><td class="navbox-list-with-group navbox-list navbox-odd" style="width:100%;padding:0"><div style="padding:0 0.25em">

<li><a href="Companding" title="Companding">Companding</a></li>

<li><a href="Convolution" title="Convolution">Convolution</a></li>

<li><a href="Dynamic_range" title="Dynamic range">Dynamic range</a></li>

<li><a href="Latency_(audio)" title="Latency (audio)">Latency</a></li>

<li><a href="Nyquist%E2%80%93Shannon_sampling_theorem" title="Nyquist–Shannon sampling theorem">Nyquist–Shannon theorem</a></li>

<li><a href="Sampling_(signal_processing)" title="Sampling (signal processing)">Sampling</a></li>

<li><a href="Silence_compression" title="Silence compression">Silence compression</a></li>

<li><a href="Sound_quality" title="Sound quality">Sound quality</a></li>

<li><a href="Speech_coding" title="Speech coding">Speech coding</a></li>

<li><a href="Sub-band_coding" title="Sub-band coding">Sub-band coding</a></li></ul>

</div></td></tr><tr><th scope="row" class="navbox-group" style="width:1%"><a href="Audio_codec" title="Audio codec">Codec</a><br>parts</th><td class="navbox-list-with-group navbox-list navbox-even" style="width:100%;padding:0"><div style="padding:0 0.25em">

<ul><li><a href="Adaptive_differential_pulse-code_modulation" title="Adaptive differential pulse-code modulation">ADPCM</a></li>

<ul><li><a href="Algebraic_code-excited_linear_prediction" title="Algebraic code-excited linear prediction">ACELP</a></li>

<li><a href="Psychoacoustics" title="Psychoacoustics">Psychoacoustic model</a></li></ul>

</div></td></tr></tbody></table><div></div></td></tr><tr><th scope="row" class="navbox-group" style="width:1%"><a href="Image_compression" title="Image compression">Image</a></th><td class="navbox-list-with-group navbox-list navbox-odd" style="width:100%;padding:0"><div style="padding:0 0.25em"></div><table class="nowraplinks navbox-subgroup" style="border-spacing:0"><tbody><tr><th scope="row" class="navbox-group" style="width:1%">Concepts</th><td class="navbox-list-with-group navbox-list navbox-odd" style="width:100%;padding:0"><div style="padding:0 0.25em">

<ul><li><a href="Chroma_subsampling" title="Chroma subsampling">Chroma subsampling</a></li>

<li><a href="Coding_tree_unit" title="Coding tree unit">Coding tree unit</a></li>

<li><a href="Color_space" title="Color space">Color space</a></li>

<li><a href="Compression_artifact" title="Compression artifact">Compression artifact</a></li>

<li><a href="Image_resolution" title="Image resolution">Image resolution</a></li>

<li><a href="Macroblock" title="Macroblock">Macroblock</a></li>

<li><a href="Pixel" title="Pixel">Pixel</a></li>

<li><a href="Quantization_(image_processing)" title="Quantization (image processing)">Quantization</a></li>

<li><a href="Standard_test_image" title="Standard test image">Standard test image</a></li>

<li><a href="Texture_compression" title="Texture compression">Texture compression</a></li></ul>

</div></td></tr><tr><th scope="row" class="navbox-group" style="width:1%">Methods</th><td class="navbox-list-with-group navbox-list navbox-even" style="width:100%;padding:0"><div style="padding:0 0.25em">

<ul><li><a href="Chain_code" title="Chain code">Chain code</a></li>

<li><a href="Deflate" title="Deflate">Deflate</a></li>

<li><a href="Fractal_compression" title="Fractal compression">Fractal</a></li>

<li><a href="Wavelet_transform" title="Wavelet transform">Wavelet</a>

<ul><li><a href="Daubechies_wavelet" title="Daubechies wavelet">Daubechies</a></li>

<li><a href="Set_partitioning_in_hierarchical_trees" title="Set partitioning in hierarchical trees">SPIHT</a></li></ul></li></ul>

</div></td></tr></tbody></table><div></div></td></tr><tr><th scope="row" class="navbox-group" style="width:1%"><a href="Data_compression#Video" title="Data compression">Video</a></th><td class="navbox-list-with-group navbox-list navbox-odd" style="width:100%;padding:0"><div style="padding:0 0.25em"></div><table class="nowraplinks navbox-subgroup" style="border-spacing:0"><tbody><tr><th scope="row" class="navbox-group" style="width:1%">Concepts</th><td class="navbox-list-with-group navbox-list navbox-odd" style="width:100%;padding:0"><div style="padding:0 0.25em">

<li><a href="Display_resolution" title="Display resolution">Display resolution</a></li>

<li><a href="Film_frame" title="Film frame">Frame</a></li>

<li><a href="Frame_rate" title="Frame rate">Frame rate</a></li>

<li><a href="Video_compression_picture_types" title="Video compression picture types">Frame types</a></li>

<li><a href="Interlaced_video" title="Interlaced video">Interlace</a></li>

<li><a href="Video#Characteristics_of_video_streams" title="Video">Video characteristics</a></li>

<li><a href="Video_quality" title="Video quality">Video quality</a></li></ul>

</div></td></tr><tr><th scope="row" class="navbox-group" style="width:1%"><a href="Video_codec" title="Video codec">Codec</a><br>parts</th><td class="navbox-list-with-group navbox-list navbox-even" style="width:100%;padding:0"><div style="padding:0 0.25em">

<li><a href="Deblocking_filter" title="Deblocking filter">Deblocking filter</a></li>

<li><a href="Lapped_transform" title="Lapped transform">Lapped transform</a></li>

<li>Motion

<ul><li><a href="Motion_compensation" title="Motion compensation">Compensation</a></li>

<li><a href="Motion_estimation" title="Motion estimation">Estimation</a></li>

<li><a href="Motion_vector" class="mw-redirect" title="Motion vector">Vector</a></li></ul></li>

<li><a href="Wavelet_transform" title="Wavelet transform">Wavelet</a>

<ul><li><a href="Daubechies_wavelet" title="Daubechies wavelet">Daubechies</a></li>

</div></td></tr></tbody></table><div></div></td></tr><tr><th scope="row" class="navbox-group" style="width:1%"><a href="Information_theory" title="Information theory">Theory</a></th><td class="navbox-list-with-group navbox-list navbox-odd" style="width:100%;padding:0"><div style="padding:0 0.25em">

<ul><li><a href="Compressed_suffix_array" title="Compressed suffix array">Compressed suffix array</a></li>

<li><a href="FM-index" title="FM-index">FM-index</a></li></ul></li>

<li><a href="Entropy_(information_theory)" title="Entropy (information theory)">Entropy</a></li>

<li><a href="Information_theory" title="Information theory">Information theory</a>

<ul><li><a href="Timeline_of_information_theory" title="Timeline of information theory">Timeline</a></li></ul></li>

<li><a href="Kolmogorov_complexity" title="Kolmogorov complexity">Kolmogorov complexity</a></li>

<li><a href="Prefix_code" title="Prefix code">Prefix code</a></li>

<li><a href="Quantization_(signal_processing)" title="Quantization (signal processing)">Quantization</a></li>

<li><a href="Rate%E2%80%93distortion_theory" title="Rate–distortion theory">Rate–distortion</a></li>

<li><a href="Redundancy_(information_theory)" title="Redundancy (information theory)">Redundancy</a></li>

<li><a href="Data_compression_symmetry" title="Data compression symmetry">Symmetry</a></li>

<li><a href="Smallest_grammar_problem" title="Smallest grammar problem">Smallest grammar problem</a></li></ul>

</div></td></tr><tr><th scope="row" class="navbox-group" style="width:1%">Community</th><td class="navbox-list-with-group navbox-list navbox-even" style="width:100%;padding:0"><div style="padding:0 0.25em">

<ul><li><a href="Hutter_Prize" title="Hutter Prize">Hutter Prize</a></li></ul>

</div></td></tr><tr><th scope="row" class="navbox-group" style="width:1%">People</th><td class="navbox-list-with-group navbox-list navbox-odd" style="width:100%;padding:0"><div style="padding:0 0.25em">

<ul><li><a href="Mark_Adler" title="Mark Adler">Mark Adler</a></li>

</div></td></tr></tbody></table></div></div><div><div class="zim-footer">

This article is issued from <a class="external text" title="Last edited on 2024-04-30" href="https://en.wikipedia.org/wiki/?title=Compressed_data_structure&oldid=1221444294">Wikipedia</a>. The text is available under <a class="external text" href="https://creativecommons.org/licenses/by-sa/4.0/deed.en">Creative Commons Attribution-Share Alike 4.0</a> unless otherwise noted. Additional terms may apply for the media files.

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